june_1-2_2014_detailed_installation_steps_for_parallel_vh-1_and_required_libraries
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june_1-2_2014_detailed_installation_steps_for_parallel_vh-1_and_required_libraries [2014/06/03 00:10] willcox |
june_1-2_2014_detailed_installation_steps_for_parallel_vh-1_and_required_libraries [2014/06/03 00:26] willcox |
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| + | Back to WGV Group Logbook: [[wgv|Welcome to the WGV Group Logbook]] | ||
| + | |||
| + | ---- | ||
| + | ====== Setting up Parallel VH-1 with NetCDF ====== | ||
| + | ===== Getting the NetCDF Libraries (v4.2) ===== | ||
| + | ==== Setting Up NetCDF From Source ==== | ||
| + | ===== Modifying the Parallel VH-1 Files ===== | ||
| + | ---- | ||
| + | |||
| + | Date: June 1-2, 2014 | ||
| + | |||
| + | Donald Willcox | ||
| + | |||
| + | ---- | ||
| + | |||
| ====== Setting up Parallel VH-1 with NetCDF ====== | ====== Setting up Parallel VH-1 with NetCDF ====== | ||
| The parallel version of VH-1 uses netcdf, and configuring mpich and netcdf and compiling the parallel version requires installing the following libraries. On Fedora, I installed all of these via ''yum install <library>'' and they are likely available via ''apt-get'' if your Linux distribution uses Synaptic. | The parallel version of VH-1 uses netcdf, and configuring mpich and netcdf and compiling the parallel version requires installing the following libraries. On Fedora, I installed all of these via ''yum install <library>'' and they are likely available via ''apt-get'' if your Linux distribution uses Synaptic. | ||
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| - | ==== Modifying the Parallel VH-1 Files ==== | + | ===== Modifying the Parallel VH-1 Files ===== |
| The next step is to modify the Makefile in VH1/src/Parallel because it expects to be compiled with Intel's ifort and I'm using gfortran and also because I need to compile mergeslabs.f90, which takes the multiple netcdf files output per timestep and merges them into one. The first modification is to set these flags as follows: | The next step is to modify the Makefile in VH1/src/Parallel because it expects to be compiled with Intel's ifort and I'm using gfortran and also because I need to compile mergeslabs.f90, which takes the multiple netcdf files output per timestep and merges them into one. The first modification is to set these flags as follows: | ||
june_1-2_2014_detailed_installation_steps_for_parallel_vh-1_and_required_libraries.txt ยท Last modified: 2014/06/03 00:27 by willcox
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